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Ken Bloom | USLHC | USA

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Broadcast your data

Saturday, January 28th, 2012

Are you addicted to YouTube? No, I wouldn’t say that about myself, but gosh, it’s rather amazing what you can find on there. At home with the kids lately, we’ve been looking at classic bits of The Electric Company, the 1970′s Children’s Television Workshop educational show which spans the period of late Tom Lehrer to early Morgan Freeman. Part of what makes YouTube great is that it’s so easy to use. You put a phrase into the search window, and some computer somewhere (don’t ask me where) quickly finds the data that you are looking for. Then you just click a button and the videos come streaming onto your computer, without a whole lot of effort from you. You don’t have to know what computer disk the file resides on, or the directory structure of that computer. For all you know, the video might be coming from several different computers at once, with the source being adjusted in real time to give the best streaming performance.

Now, compare that to how we go about getting our data in particle physics experiments. Back in the day, you definitely had to know the exact directory and exact file names of the dataset that you wanted to analyze, and then carefully type that into your computer programs. A single typo could destroy hours or days of computing effort. We’ve largely gotten past that — we have better technology for file catalogues, such that you can just specify the name of a dataset, and all the file names will be looked up for you. But we are still largely constrained by “data locality,” the requirement that your analysis program must be running on a computer in the same room as the computer that has the disk with your data on it. This constraint leads to a variety of optimization problems. What if a dataset gets popular all of a sudden — are there enough processing resources in the right place to handle the demand? Can you get more copies out to the bigger processing centers quickly? Are you then under-using other centers and letting CPU cycles go idle? If you want to run on a given dataset, you might know which computing sites have that data, but how do you know which has the most available resources right now? And finally, what if data at a site gets corrupted? Will all the jobs running in that computer room start failing? Needless to say this doesn’t sound like YouTube at all.

I and some colleagues are working on a project that tries to change this. We’ve called it “Any Data, Anytime, Anywhere,” as our goal is to make it as easy to access LHC data as it is to access a YouTube video. At the heart of the system is a “redirector,” a system that serves as a giant index of files that reside at computing sites all over the country. A computer program asks the redirector for a file, the redirector finds an optimal source for the file, and the program then reads the file from that source, without the user having to know where the file actually is. That means that the source could be thousands of miles away, and the only way for the remote reading to be efficient is for it to be nearly as fast as reading from a computer in the same room, so some effort has gone into making that happen. Once you have removed the data locality requirement, all sorts of things are possible. If a file is corrupt at one site, it could introduce a fallback mechanism so that a read failure results in an attempt to get the same file through the redirector instead. If a particular site gets overloaded with jobs, we could start to migrate them to a less busy site, even if that site doesn’t actually have the data that the jobs want; they can be obtained through the redirector instead. That could lead to a better global balancing of supply and demand for resources. While we imagine that it’s computers at CMS institutions that will be reading the data, there’s nothing to stop any computer anywhere from reading the data, even if it is not part of CMS. That could really fulfill the promise of grid computing — if we can borrow a computer for a few hours, we can use it to analyze CMS data even if that computer starts out knowing nothing about CMS. It also gives us a straightforward way to use cloud-computing resources, if that were to turn out to be cost effective.

And on top of all that, what stops this from being limited to the LHC? Many disciplines have large datasets that need to be analyzed by distributed teams of scientists. In principle, they could use the same infrastructure. We’re hoping that this technology could eventually be used across the sciences and even into emerging fields like digital humanities. If that were to happen, then researchers from all sorts of disciplines could consider themselves Easy Readers, at least as far as their data is concerned.

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Does the world want it to be like that?

Tuesday, December 27th, 2011

Lincoln, Nebraska, where I live, is on the western end of the Central time zone, and as a result, the sun goes down pretty late on the clock here. Even at this time of year, sundown isn’t until 5 PM, and it’s not really dark until at least six. We usually get home with the kids around five, and then we do dinner and playtime inside until bed. That means that the children, who are five and three, are rarely outside when it is really dark out, and they don’t get to see the stars, beyond the bright planets, very often.

The past weekend was an exception; it was Chanukah and there were many evening celebrations, as you are supposed to light the candles at sundown, so we were out past bedtime. On Friday night, as we went out to our car to drive home, my daughter, the older kid, looked up at the cloudless sky and marveled at the number of stars that she could see. I looked up too, and took the opportunity to point out one of the few constellations that I can identify, Orion. (Whenever I think about Orion, I think about John Guare’s “The House of Blue Leaves” — sorry.) “See, it looks like a person, with a top part and a bottom part, and those three stars are a belt,” I explained. My daughter looked at this a little more, and then asked, “Does the world want it to be like that?”

Interesting question — what she meant was whether the stars were intentionally arranged in the shape of a person, or whether it was just something that people made up when they looked at the stars. The answer is the latter, of course, although perhaps the ancients thought differently. Our conversation for the evening went on to other topics in astronomy (“Planets are round,” she said, “so it’s very hard to stand on them.”), but I kept thinking about what she had asked me.

As scientists, we collect data from the world around us, and try to make patterns out of it that we can understand. These patterns are theories, really, and as more data come in, we re-evaluate the theories to see if they are still consistent with the data. Do all the stars make shapes that look like familiar things? Are all of the measurements from the LHC consistent with a Higgs boson at 125 GeV? Are we humans just imposing an anthropic view onto the world? Measurements throughout particle physics, not just at the LHC, seem to support the idea of the Higgs mechanism. Is that consistency just a pattern that we have invented? Or does the world actually want it to be like that?

A year from now, we hope to have an answer to this question. As we head into 2012, a potentially decisive year for particle physics, I hope that all of our Quantum Diaries readers have the opportunity to ask, and answer, their own questions about what the world wants it to be like.

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Don’t let the black dots fool you….

Tuesday, December 13th, 2011

(With apologies to Michael Turner….)

Here, some rapid post-game analysis for all of you. First, a big thanks to fellow US LHC bloggers Aidan Randle-Conde and Seth Zenz for their tweeting during today’s seminar, which made it easier for all of us in Nebraska to follow what was going on. Based on the social media, press releases and so forth that I’m following, this is a very big day for the field of particle physics, and it’s fun to be a part of it.

Let’s remember that the LHC only ended the 2011 proton run about six weeks ago, and in that short time since CMS and ATLAS have analyzed all the data recorded. You almost never see a turnaround as fast as that, given the data processing required and the careful validation that needs to be done of the data and then the analyses themselves. Congratulations are very much in order to the computing teams for the experiments, and all the people who are checking data quality, and all the people who stayed up late making the plots that were shown in today’s presentations.

The boilerplate summary has already been said, but I haven’t had the opportunity to say it yet: today’s results are certainly tantalizing, but it’s impossible to know what they will amount to in the long term. We’ve seen signals of this significance disappear before. Perhaps the more solid thing to talk about is the fact that the window of possibility for the standard-model Higgs is slowly but surely closing, as both experiments have now excluded a wide range of the possible Higgs masses. (The caveat here is the phrase “standard-model Higgs”; I noticed the other night that two teams of theorists — on the same day — posted articles saying that the addition of just one more particle to our theories could change all of these conclusions.) I’m not sure that when the LHC started up two years ago we would have imagined that we’d be able to make such strides so quickly.

In short, there is reason to be excited — but we don’t know what the reason is yet! We might be close to discovering a Higgs boson, or we might be close to excluding it. In either case, 2012 will be a decisive year for particle physics as we have understood it for the past thirty or forty years.

Now, on to the perhaps controversial part of the post. As I was trying to follow the talks today, I started to wonder — this experiment sees a peak here, this one sees one there. Is anyone being lucky? Face it, CMS and ATLAS got to record one set of data. If we were to record the same amount of integrated luminosity once more, we’d have a different set of events, and maybe we’d get some interesting events again, or maybe not. You can’t know. However, if we were to do the experiment again, we’d have the same detectors, and the same analysis techniques. The data are just some form of luck, one roll of the dice. The real figure of merit for how well the experiments are doing in the Higgs search is not the result you get from this one dataset, but how well you would expect to do for any given dataset of this size.

Fortunately the experiments tell you how well they expect to do — it’s encoded in the “expected limit” lines on the result plots. Here are those plots for the low-mass Higgs region of the search for CMS and ATLAS. Now, try not to look too hard at the black dots:

Low-mass Higgs search limit plot from CMS
Low-mass Higgs search limit plot from ATLAS

Just eyeballing things, I’d say that CMS expected an exclusion limit (in the absence of a Higgs) of 117 GeV, and ATLAS about 124 GeV. Obviously there are uncertainty bands on this…if we take the two standard deviation line from the expected limit and call that the worst-case scenario (or at least a worse-case scenario) then CMS would expect to exclude to about 133 GeV and ATLAS about 137 GeV. In the spirit of comity, I’ll declare this a tie. As an experimentalist, I would claim that the burning question for 2012 is not what the mass of the Higgs boson is, or whether it exists at all. Instead, we should be asking how quickly the experiments can push that “expected” line down such that there is the potential of excluding the Higgs with the data in hand. It will be done with some combination of more data and more cleverness.

Maybe today we’ve been lucky enough to see the first hint of a Higgs boson. Or maybe not! My experience in life is that you do have to be a bit lucky to get ahead…but before you can be lucky, you have to be good. What we have seen today is that both experiments are downright excellent! Next year we’ll find out if we’re lucky, too.

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DNA in a haystack

Tuesday, December 6th, 2011

While avoiding writing the final exam for my course (sorry students, I’m now almost done with it), I stumbled on this article in The New York Times about the problems of a deluge of data in genomics. At this point, genomes can be sequenced much more quickly than they can be analyzed. Indeed, the article reports that there is enough sequencing capacity in the world to fill a stack of DVD’s two miles high with data each year.

Sound familiar? (Including the DVD analogy?) Particle physics experiments face the same problem. At the LHC, we have particle collisions 600 million times per second. The four LHC experiments produce a petabyte of data (a million gigabytes) per second — if we were to keep every bit of data that the LHC produced. Obviously, we don’t do that; the data is heavily filtered by the experiments’ trigger systems, which reduce the data rate to 300-400 events per second per experiment. Now, that will still get you something like 15-25 PB of data per year, and a stack of DVD’s that’s several times higher than that of the DNA sequences. So we have the same problem, if not a bigger one — and that is after we’ve only kept one in a million collisions! Particle physics has long been on the forefront of data-intensive computing.

I’m no biologist, and I won’t claim that I know any more about genomics than I do about soccer or wide-area networking. But it seems natural to ask what (if anything) genomics can learn from particle physics in terms of data management. I could think of two ideas. First, must they really keep all the data? We throw away essentially every collision that happens (but for that one in a million), and can still learn a huge amount of physics. I think that this is to a large extent because we know what is interesting and what isn’t, and know how to throw away the boring stuff. For all I know, it might not be possible in genomics. The data you are throwing away might be the genomes of individual people, and if you really want to understand how one particular person works, you can’t do that. But if you are just looking for trends in the population, maybe you can.

Another idea is, can they make the data any smaller? In particle physics experiments, we do a lot of “zero suppression” up front, just throwing away the information from electronics channels that have nothing to say about a particular event before we even record the data to a disk. Then, when we process the data to estimate the energies and momenta of the particles produced in a given collision, we typically store even less information. The samples we present to analyzers are very compact, essentially down to the momentum vectors, and not carrying all of the channel-by-channel information about each particle. I’ve read that a lot of our DNA is actually “junk” with no impact on how biological traits are expressed. How much of this can be identified in a given genome and then safely be thrown away? Or, if you don’t quite feel safe about throwing it all away, could you just keep it in, say, 10% of the genomes as a safety measure? (For trigger aficionados, this would be a form of prescaling.)

I don’t know the answers to any of these questions, but perhaps the biologists would, or could at least use them to stimulate some new thinking. Just the other day, the boss was telling the intensity frontier workshop that particle physics is part of a fabric of sciences in which different fields make broad contributions to each other. Data-intensive computing could be considered one of the threads that holds that fabric together.

Thanks to Ruth Pordes, executive director of the Open Science Grid, for suggesting this as a blog topic.

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December 13 CERN seminar on Higgs searches

Saturday, December 3rd, 2011

It’s been reported already in other outlets (e.g. other blogs), but since no one has said it yet here, there will be seminars by CMS and ATLAS on December 13 at CERN on the status of their searches for the Higgs boson. Significantly more data than was shown in a combined result just two week ago will be presented. Stay tuned!

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The plot heard ’round the world (and a contrarian viewpoint)

Friday, November 18th, 2011

At long last, here it is! From the Hadron Collider Physics conference in Paris, and as documented by the CMS and ATLAS collaborations, the plot you have all been waiting for:

Higgs limits from CMS and ATLAS

As we last saw, CMS and ATLAS had each set limits on the rate of production of standard-model Higgs bosons at the Lepton-Photon conference in August. Now, for the first time ever, the two collaborations have combined their results. Each experiment has recorded about the same amount of data, so to first approximation, this combination allows us to double the number of collisions that are analyzed, and thus to set more stringent limits on Higgs mass (or possibly to discover a Higgs).

Since one of my colleagues took me to task just this morning for these plots being impenetrable, let’s review what is being measured and what the plot shows. First, remember that pretty much everything in particle physics is a counting experiment. You record so much data, and then count the number of times you observe a given phenomenon in the data. On the basis of this, you can essentially say, “given that I’ve seen this happen X times, surely if I were to do this experiment over and over, it would be very unlikely for me to see this happen more than N > X times.” N is then the “upper limit” on the number of events that we would expect to observe. (I’m sure my statistical friends will forgive me for this hand-waving description). We can convert that upper limit on event counts into an upper limit on the cross section for the process; the cross section is essentially the probability for a process to occur, which is obtained after normalizing out how much data has been recorded. The vertical axis of this plot gives the upper limit on the cross section for Higgs production, normalized to the expected cross section that we calculate from the quantum mechanics of the standard model.

The points show the upper limits that are obtained as a function of putative Higgs mass. It is a different upper limit for each Higgs mass because as the mass changes, you have different Higgs production and decay rates and different sensitivity to those decays; depending on the Higgs mass, it can be easier or harder to observe. As can be observed, the points fall below y = 1 over a wide range of Higgs masses. This indicates that we are observing fewer putative Higgs events than we would expect from the standard model prediction, and thus we claim to “exclude” that prediction, and thus the possibility of a standard-model Higgs at those particular mass values.

One should also pay attention to the dotted line and the colored bands. The dotted line represents what limit we would be able to set if there were no Higgs boson at all, and all there were to observe were background processes that look similar to the Higgs but aren’t. The bands represent the one and two standard deviation uncertainties on that expected limit. In general, the limits set are about as good as those we expected to set. There are some excursions from expectations, but they are generally no worse than two standard deviations, which is not impossible. This gives us some confidence that the observed limits aren’t anything crazy.

By combining the results of the two experiments, a very wide range of possible Higgs masses is excluded. Neither experiment alone could produce a result this strong, and hence the great interest in the combined result, which took many months and much coordination between the two experiments. Each group of experimenters had to understand the others’ measurement in detail to be able to do the combination correctly. It’s a lot of work, but the improvement in the bottom-line result is worth it.

And what do we learn from this? It appears that if there is a standard-model Higgs boson, it must have a very large mass (which is disfavored by other measurements), or a mass between 114 and 141 GeV. Optimists will note that in that region, more candidate events are observed than would be expected from a no-Higgs scenario, although not with any statistical significance worth talking about. If one believes everything about a standard-model Higgs, then ATLAS and CMS are currently putting quite a squeeze on its properties.

Of course, that’s a big “if.” The contrarian in me likes to keep two things in mind. First, all of this statistical stuff is just a convention we’ve adopted to communicate with each other. (We’ll see if my statistical friends forgive me for saying that!) The definition of excluded is, in my opinion, rather arbitrary, and you could imagine doing things differently and coming up with a different range of excluded Higgs mass values. If we are are to claim a discovery of a Higgs boson someday, I would assert that the evidence will have to be even clearer than what can be obtained from such statistical analyses.

Second, why should we believe any of the predictions? They are cooked up from many ingredients, each of which have their own uncertainties with them. It is hard to believe that the predictions are to be wildly off, but how the physics really works might not be what the standard model says it is, and thus we have to keep an open mind.

Thus, even if we reach the point where we can exclude all reasonable values of the Higgs boson mass — a point that we might reach soon, given that the experiments have recorded at least twice as much data has have been included for this combined result — and we actually do exclude those values, the search will not be over! Even if the standard model is not correct and there is no Higgs as such, the signatures of Higgs production and decay are still interesting, and could still be an indication of some kind of new physics. Higgs or no Higgs, we have a very interesting few months ahead of us.

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Piling up!

Tuesday, October 25th, 2011

At long last, the LHC today ran a rather interesting test of “high pileup” conditions. A quick reminder about pileup: the beam at the LHC (and all particle-physics accelerators) is bunched rather than continuous. Each time a bunch in one beam passes by a bunch in the other, multiple protons can interact with each other. It’s rare for more than one of these interactions to be a “hard scatter” and thus be likely to produce interesting particles. The other interactions still happen, though, and you’ll have some number of new particles produced from each of those. That’s what we refer to as the pileup. (I never liked the term, as “pileup” is also something that can happen in the electronics that we use for the detectors and the overloaded definition is confusing. I think “multiple interactions” describes it much better.) Of course, remember that our ultimate goal is to maximize the number of interesting collisions, and one way to do that is to maximize the number of particles per bunch and thus the number of interactions per crossing…but that that means more pileup, too.

As the LHC has been running lately, the typical number of interactions per crossing at the start of a fill (when the beam intensities are highest) is about 15. But in 2012, the LHC will probably run with even more particles per bunch, resulting in more interactions. Can the detectors, triggers and software handle these bigger and busier events? Today we had a test; the LHC ran with fewer bunches than usual, but with many more protons per bunch. Here is the number of interactions per beam crossing as measured by the CMS online monitoring system:

Pileup distribution from high-pileup fill

Pileup vs. time for today's high-pileup fill

As can be seen, the fill started at 32 interactions per crossing — about twice as much as we have during regular LHC running now. (There were a couple of intervals in which the LHC separated the beams at CMS, as a test, and the pileup number drops then.) At the end of the (short) fill, we still had 25. We’ll be using this data to help understand how to best optimize our operations for next year. Next year isn’t far away — the proton-proton run ends this weekend!

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Steve in Geneva

Wednesday, October 19th, 2011

Here I am at CERN, for the first time in more than three months. When I was here this summer, I stayed for five weeks and had my family along with me. Now I’m just here for a short stay and rooming in the hostel again. But in some ways, it feels like I never left. (Except for the jet lag, of course.) The exciting times continue on the LHC experiments. We are under two weeks from the end of this year’s proton run, and we are eager to gather every last bit of data we can before the heavy-ion run and then a technical stop that won’t end until sometime in March. The dataset that we will end with will be more than twice as big as that which we analyzed for results that went to conferences this summer, so it will be very interesting to see what emerges with the additional data.

You might not have heard, but since the last time I posted, Apple co-founder and CEO Steve Jobs died. Obviously Jobs had a huge impact on how we live in our technological world. In the days after his death, I read articles discussing his influence on computing, design, music, publishing, politics, and so forth. Eager to jump onto the bandwagon, I decided to take a pilgrimage to the CERN visitor center at the Globe, located across the street from the Meyrin site. There, you can find this computer in a display area:

A NeXT computer, from 1990.

The ratty sticker on the front implores passers-by not to shut down the computer. The computer is a NeXT, a product of the company that Jobs founded after he was forced out of Apple in the 1980′s. This happens to be the computer that belonged to Tim Berners-Lee, the first developer of what we now know as the World Wide Web, and it hosted the first Web server. (Do not shut down, indeed! Someone on the other side of the world might be using that computer.)

It’s true, we trot this one out a lot in particle physics, but the Web was invented by particle physicists to be used as an information and document sharing system, and it ended up changing the world. Particle physics has driven many developments in computer science over the years, as we’ve long had large datasets and computationally-intensive problems. These days, I feel like I see a lot of back and forth between particle physics and the computing world. Because of the scale of the data volume that we serve and the number of users who want to access it, and because we’re trying to do it on the relatively cheap, we’ve moved to a model of distributed computing that is realized in the Worldwide LHC Computing Grid. Grid computing, which allows straightforward access to computing resources owned by others that aren’t being used at the moment, has been adopted across sciences that do large-scale computing, and cloud computing is an offshoot of this development.

At the same time, we are definitely making use of computing technologies that have been developed in the commercial world. My favorite example of this is Hadoop. It’s a very powerful set of tools, and many US LHC computing sites are using its disk-management system, which is also used by Web sites like Facebook. It has good scaling properties and is easy to maintain, making life easier for site operators. We’re always on the lookout for new ideas that we can bring in from the computing world that will make it easier for physicists to make the most out of the LHC data.

Thanks to all of these tools, someone — perhaps very soon — will be making a plot that could show evidence for new physical phenomena. It wouldn’t be possible without the computing systems that I just described. Will this plot be viewed for the first time on the screen of an Apple product? Will that very screen end up in a display at the Globe? We’ll see.

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Tevatron past as LHC prologue

Wednesday, September 28th, 2011

This Friday, Fermilab will turn off the Tevatron for the last time after a 28-year run. It has been a constant in my life as a particle physicist, and indeed for a whole generation of particle physicists. I know some people who have managed to spend their entire careers involved with the Tevatron in some way. Not true for me; I was on hiatus at the Cornell Electron Storage Ring for five years as a graduate student. But the Tevatron was where I had my first experiences as an undergraduate researcher; as a college freshman, I was stunned to find myself with a Fermilab ID card in my pocket and suddenly in on the hunt for the top quark. (No dice; another six years, significant detector upgrades, and more than an order of magnitude more data had to come first.) And as a postdoctoral researcher, it was where I had my greatest triumphs (moderate as they may be) as a full-time researcher. (As a professor with many other things to juggle, it would be a stretch to call me a full-time researcher now.) I learned a tremendous amount along the way about physics and about how to be a physicist.

(But I will not be attending the shutdown ceremonies on September 30 — it’s Rosh Hashanah, the Jewish new year. What is it with the managers of particle physics laboratories who can’t read a calendar? So much for getting Fermilab Today to pick up this blog post….)

The Tevatron’s longevity surely puts it into a special category of scientific enterprises that have captured the public imagination because of their epic scope. The Voyager 1 satellite, for instance, has been chugging along since 1979, and barring unforeseen circumstances will continue to tell us about the nature of the universe. The Tevatron in its own way will keep chugging along too, as there is so much data yet to analyze that it will keep teaching us about the universe for some years to come.

I’m not going to tick off all of the accomplishments of the Tevatron and CDF and D0, its principal experiments; this has been done elsewhere, and also has been covered in excellent presentations at the DPF meeting by Steve Holmes and Paul Grannis, both of whom were there pretty much from the beginning. (Chris Quigg also provides a lovely summary of the physics achievements in the CERN Courier.) But what I would like to point out is that the Tevatron program of 2011 is not the program that was envisioned when the machine design was launched in the late 1970′s. The clear targets of the machine were the W and Z bosons and the top quark, and these are now understood in detail because of the Tevatron. But as far as I know, no one anticipated the program of bottom-quark physics that emerged, no one thought that precision measurements of masses could be done at a hadron collider, and even just a few years ago it would have been optimistic to suggest that the Tevatron experiments would have the capability to observe the Higgs boson. On the accelerator side, the final instantaneous luminosity was a factor of 400 better than design, meaning that there was an average 35% annual improvement over twenty years.

Since this is an LHC blog — what can we learn about the LHC from this? It is that we should not underestimate the potential that we have in front of us. The LHC will likely operate for as long as the Tevatron has, and we can realistically expect similar performance improvements along the way. We should also not underestimate how our experimental reach can be increased through advances in detector technology, and the just plain cleverness that physicists will bring to the table when given the chance to solve a challenging and important problem. In 2037, there will be new generation of particle physicists for whom the LHC is a constant of life, and I expect that we will be looking back on an LHC legacy that is just as memorable as that of the Tevatron.

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Life in science, in Science

Thursday, September 15th, 2011

Just a quick note here to point out a very nice article by Adrian Cho in Science magazine about life in the trenches on ATLAS and CMS, the biggest LHC experiments. I think it captures the working environment very well — it’s a fascinating balance of collaboration and competition. Beyond that, I’ll let Adrian, and the physicists he interviewed, speak for themselves. Enjoy!

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